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--- home [2013/02/01 12:13]
Christophe Dessimoz
+++ home [2015/08/28 12:21] (current)
Christophe Dessimoz
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 ====== Published reviews initiated in this course ======
-The following publications started as student assignment in this course, either at ETH Zurich (2010-2011) or University of Cambridge (2012):
+The following publications started as student assignment in this course, either at ETH Zurich (2010-2011) or University of Cambridge (2012-2013):
   -  A Szalkowski and C Schmid, //Rapid innovation in ChIP-seq peak-calling algorithms is outdistancing benchmarking efforts//, Brief Bioinform (2011) 12 (6): 626-633. ([[http://bib.oxfordjournals.org/content/early/2010/11/08/bib.bbq068.full.html?ijkey=JiyuBmNw42pQXxj&keytype=ref|Link]])
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   -  L du Plessis et al., //The What, Where, How, and Why of Gene Ontology -- A Primer for Bioinformaticians//, Brief Bioinform (2011) 12 (6): 723-735 ([[http://dx.doi.org/10.1093/bib/bbr002|Link]])
   - A Altenhoff and C Dessimoz, //Inferring Orthology and Paralogy//, Evolutionary Genomics: Statistical and Computational methods (M Anisimova, Editor), 2012, Springer Humana, Vol. 855, ([[http://www.springerlink.com/content/q7845n48142v8250/?MUD=MP|Link]])
-  - F Iorio et al., //Transcriptional data: a new gateway to drug repositioning?//, Drug Discovery Today (2012), //in press//, ([[http://www.sciencedirect.com/science/article/pii/S1359644612002735|Link]])
+  - F Iorio et al., //Transcriptional data: a new gateway to drug repositioning?//, Drug Discovery Today (2013), 18:7/8, pp350-357, ([[http://www.sciencedirect.com/science/article/pii/S1359644612002735|Link]])
-  - D Reker and L Malmström, //Bioinformatic challenges in targeted proteomics//, Journal of Proteome Research (2012), //in press//, ([[http://pubs.acs.org/doi/pdf/10.1021/pr300276f|Link]])
+  - D Reker and L Malmström, //Bioinformatic challenges in targeted proteomics//, Journal of Proteome Research (2012), J. Proteome Res., 2012, 11 (9), pp 4393–4402, ([[http://pubs.acs.org/doi/pdf/10.1021/pr300276f|Link]])
-  - M Sunnåker et al., //Topic Page: Approximate Bayesian computation//, PLoS Comput Biol, accepted ([[http://topicpages.ploscompbiol.org/wiki/Approximate_Bayesian_computation|Link]])
+  - M Sunnåker et al., //Topic Page: Approximate Bayesian computation//, PLoS Comput Biol (2013), 9:1, e1002803 ([[http://dx.doi.org/10.1371/journal.pcbi.1002803|Link]])
-  - S Iantorno, K Gori, et al., //Who Watches the Watchmen? An Appraisal of Benchmarks for Multiple Sequence Alignment//, Multiple Sequence Alignment Methods (D Russell, Editor), Methods in Molecular Biology, Springer Humana, to appear ([[http://arxiv.org/abs/1211.2160|arXiv]])
+  - S Iantorno, K Gori, et al., //Who Watches the Watchmen? An Appraisal of Benchmarks for Multiple Sequence Alignment//, Multiple Sequence Alignment Methods (D Russell, Editor), Methods in Molecular Biology, 2014, Springer Humana, Vol. 1079 ([[http://arxiv.org/abs/1211.2160|arXiv]], [[http://dx.doi.org/10.1007/978-1-62703-646-7_4|journal]])
+  - Q Ul Ain, A Aleksandrova, FD Roessler and PJ Ballester, //Machine-learning scoring functions to improve structure-based binding affinity
+prediction and virtual screening//, WIREs Comput Mol Sci (2015). ([[http://onlinelibrary.wiley.com/doi/10.1002/wcms.1225/pdf|link]])
+  - M Ravenhall, N Škunca, F Lasalle, C Dessimoz, //Inferring horizontal gene transfer//, PLOS Computational Biology (2015), 11:5, e1004095 ([[http://dx.doi.org/10.1371/journal.pcbi.1004095]])