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home [2015/08/28 12:20] Christophe Dessimoz |
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| ====== Published reviews initiated in this course ====== | ====== Published reviews initiated in this course ====== | ||
| - | The following publications started as student assignment in this course, either at ETH Zurich (2010-2011) or University of Cambridge (2012): | + | The following publications started as student assignment in this course, either at ETH Zurich (2010-2011) or University of Cambridge (2012-2013): |
| - A Szalkowski and C Schmid, //Rapid innovation in ChIP-seq peak-calling algorithms is outdistancing benchmarking efforts//, Brief Bioinform (2011) 12 (6): 626-633. ([[http://bib.oxfordjournals.org/content/early/2010/11/08/bib.bbq068.full.html?ijkey=JiyuBmNw42pQXxj&keytype=ref|Link]]) | - A Szalkowski and C Schmid, //Rapid innovation in ChIP-seq peak-calling algorithms is outdistancing benchmarking efforts//, Brief Bioinform (2011) 12 (6): 626-633. ([[http://bib.oxfordjournals.org/content/early/2010/11/08/bib.bbq068.full.html?ijkey=JiyuBmNw42pQXxj&keytype=ref|Link]]) | ||
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| - F Iorio et al., //Transcriptional data: a new gateway to drug repositioning?//, Drug Discovery Today (2013), 18:7/8, pp350-357, ([[http://www.sciencedirect.com/science/article/pii/S1359644612002735|Link]]) | - F Iorio et al., //Transcriptional data: a new gateway to drug repositioning?//, Drug Discovery Today (2013), 18:7/8, pp350-357, ([[http://www.sciencedirect.com/science/article/pii/S1359644612002735|Link]]) | ||
| - D Reker and L Malmström, //Bioinformatic challenges in targeted proteomics//, Journal of Proteome Research (2012), J. Proteome Res., 2012, 11 (9), pp 4393–4402, ([[http://pubs.acs.org/doi/pdf/10.1021/pr300276f|Link]]) | - D Reker and L Malmström, //Bioinformatic challenges in targeted proteomics//, Journal of Proteome Research (2012), J. Proteome Res., 2012, 11 (9), pp 4393–4402, ([[http://pubs.acs.org/doi/pdf/10.1021/pr300276f|Link]]) | ||
| - | - M Sunnåker et al., //Topic Page: Approximate Bayesian computation//, PLoS Comput Biol, accepted ([[http://topicpages.ploscompbiol.org/wiki/Approximate_Bayesian_computation|Link]]) | + | - M Sunnåker et al., //Topic Page: Approximate Bayesian computation//, PLoS Comput Biol (2013), 9:1, e1002803 ([[http://dx.doi.org/10.1371/journal.pcbi.1002803|Link]]) |
| - S Iantorno, K Gori, et al., //Who Watches the Watchmen? An Appraisal of Benchmarks for Multiple Sequence Alignment//, Multiple Sequence Alignment Methods (D Russell, Editor), Methods in Molecular Biology, 2014, Springer Humana, Vol. 1079 ([[http://arxiv.org/abs/1211.2160|arXiv]], [[http://dx.doi.org/10.1007/978-1-62703-646-7_4|journal]]) | - S Iantorno, K Gori, et al., //Who Watches the Watchmen? An Appraisal of Benchmarks for Multiple Sequence Alignment//, Multiple Sequence Alignment Methods (D Russell, Editor), Methods in Molecular Biology, 2014, Springer Humana, Vol. 1079 ([[http://arxiv.org/abs/1211.2160|arXiv]], [[http://dx.doi.org/10.1007/978-1-62703-646-7_4|journal]]) | ||
| - Q Ul Ain, A Aleksandrova, FD Roessler and PJ Ballester, //Machine-learning scoring functions to improve structure-based binding affinity | - Q Ul Ain, A Aleksandrova, FD Roessler and PJ Ballester, //Machine-learning scoring functions to improve structure-based binding affinity | ||
| - | prediction and virtual screening//, WIREs Comput Mol Sci 2015. ([[http://onlinelibrary.wiley.com/doi/10.1002/wcms.1225/pdf|link]]) | + | prediction and virtual screening//, WIREs Comput Mol Sci (2015). ([[http://onlinelibrary.wiley.com/doi/10.1002/wcms.1225/pdf|link]]) |
| - | - M Ravenhall, N Škunca, F Lasalle, C Dessimoz, //Inferring horizontal gene transfer//, PLOS Computational Biology, 2015, 11:5, e1004095 ([[http://dx.doi.org/10.1371/journal.pcbi.1004095]]) | + | - M Ravenhall, N Škunca, F Lasalle, C Dessimoz, //Inferring horizontal gene transfer//, PLOS Computational Biology (2015), 11:5, e1004095 ([[http://dx.doi.org/10.1371/journal.pcbi.1004095]]) |