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schedule_2013 [2013/02/20 22:00]
Christophe Dessimoz
schedule_2013 [2013/03/06 22:27] (current)
Christophe Dessimoz
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 | 3rd | Jan 30th | Seminar 3 - **Ecological niche modeling and infectious disease**\\ [[http://​www.bath.ac.uk/​bio-sci/​contacts/​|Dr Daniel Henk]] (U Bath) | {{:​2013:​l4-structuring_+_outlining.pdf|Structuring & Outlining}} \\ [JS]     | {{:​2013:​t3-reading.pdf|Recommended reading}}\\ {{:​2013:​t3-slides.pdf|Slides}}\\ {{:​2013:​t3-bibliography.bib.zip|Bibliography}} ​ | Danial(nbsp)Yar-Mukhamedov\\ Michael(nbsp)Grayling\\ Sjoert(nbsp)Jansen ​  ​| ​ | 3rd | Jan 30th | Seminar 3 - **Ecological niche modeling and infectious disease**\\ [[http://​www.bath.ac.uk/​bio-sci/​contacts/​|Dr Daniel Henk]] (U Bath) | {{:​2013:​l4-structuring_+_outlining.pdf|Structuring & Outlining}} \\ [JS]     | {{:​2013:​t3-reading.pdf|Recommended reading}}\\ {{:​2013:​t3-slides.pdf|Slides}}\\ {{:​2013:​t3-bibliography.bib.zip|Bibliography}} ​ | Danial(nbsp)Yar-Mukhamedov\\ Michael(nbsp)Grayling\\ Sjoert(nbsp)Jansen ​  ​| ​
 | 4th | Feb 6th  | Seminar 4 - **Genome-wide approaches to study alternative splicing using RNA-seq data**\\ [[http://​www.luscombelab.org/​People/​People-London/​index.html|Dr Kathi Zarnack]] (LRI) | {{:​2013:​l5-editing.pdf|Editing}} [CD]      | {{:​2013:​t4-reading.pdf|Recommended reading}}\\ {{:​2013:​t4-slides.pdf|Slides}}\\ {{:​2013:​t4-bibliography.pdf|Bibliography}} ​  | Ola(nbsp)Kolodziejczyk\\ Sebastian(nbsp)John\\ Sun(nbsp)Lee ​  | | 4th | Feb 6th  | Seminar 4 - **Genome-wide approaches to study alternative splicing using RNA-seq data**\\ [[http://​www.luscombelab.org/​People/​People-London/​index.html|Dr Kathi Zarnack]] (LRI) | {{:​2013:​l5-editing.pdf|Editing}} [CD]      | {{:​2013:​t4-reading.pdf|Recommended reading}}\\ {{:​2013:​t4-slides.pdf|Slides}}\\ {{:​2013:​t4-bibliography.pdf|Bibliography}} ​  | Ola(nbsp)Kolodziejczyk\\ Sebastian(nbsp)John\\ Sun(nbsp)Lee ​  |
-| 5th | Feb 13th | Seminar 5 - **Methodological challenges in the pursuit of the tree of life**\\ [[http://​christophe.dessimoz.org/​research/​|Dr Christophe Dessimoz]] (EMBL-EBI) | Tables & Figures; Effective ​Titles & Example Reference Manager(s) [JS]   | {{:​2013:​t5-reading.pdf|Recommended Reading}}\\ {{:​2013:​t5-slides.pdf|Slides}}\\ {{:​2013:​t5-bibliography.bib.zip|Bibliography}} ​ | Francisco(nbsp)Heras\\ Tisha(nbsp)Mirza\\ Vagheesh(nbsp)Narasimhan ​  |+| 5th | Feb 13th | Seminar 5 - **Methodological challenges in the pursuit of the tree of life**\\ [[http://​christophe.dessimoz.org/​research/​|Dr Christophe Dessimoz]] (EMBL-EBI) | Questions in preparation for Roundtable Discussion; Effective ​titles ​| {{:​2013:​t5-reading.pdf|Recommended Reading}}\\ {{:​2013:​t5-slides.pdf|Slides}}\\ {{:​2013:​t5-bibliography.bib.zip|Bibliography}} ​ | Francisco(nbsp)Heras\\ Tisha(nbsp)Mirza\\ Vagheesh(nbsp)Narasimhan ​  |
 | 6th | Feb 20th | Seminar 6 - **Machine learning approaches to predicting protein-ligand binding**\\ [[http://​pedroballester.com|Dr Pedro Ballester]] (EMBL-EBI) | {{:​2013:​l7.1-punctuation.pdf|Punctuation}} & {{:​2013:​l7.2-citations.pdf|Citations}};​ {{:​2013:​l7.3-social.pdf|Impacting through social media}} [CD]     | {{:​2013:​t6-reading1.pdf|Recommended Reading 1}}\\ {{:​2013:​t6-reading2.pdf|Recommended Reading 2}}\\ {{:​2013:​t6-slides.pdf|Slides}}\\ {{:​2013:​t6-bibliography.pdf|Bibliography}} ​ | Antoniya(nbsp)Aleksandrova\\ Florian(nbsp)Roessler\\ Qurrat-ul-Ain(nbsp)(Aini) ​  | | 6th | Feb 20th | Seminar 6 - **Machine learning approaches to predicting protein-ligand binding**\\ [[http://​pedroballester.com|Dr Pedro Ballester]] (EMBL-EBI) | {{:​2013:​l7.1-punctuation.pdf|Punctuation}} & {{:​2013:​l7.2-citations.pdf|Citations}};​ {{:​2013:​l7.3-social.pdf|Impacting through social media}} [CD]     | {{:​2013:​t6-reading1.pdf|Recommended Reading 1}}\\ {{:​2013:​t6-reading2.pdf|Recommended Reading 2}}\\ {{:​2013:​t6-slides.pdf|Slides}}\\ {{:​2013:​t6-bibliography.pdf|Bibliography}} ​ | Antoniya(nbsp)Aleksandrova\\ Florian(nbsp)Roessler\\ Qurrat-ul-Ain(nbsp)(Aini) ​  |
-| 7th | Feb 27th | Seminar 7 - **Clonally transmissible cancers**\\ [[http://​www.kings.cam.ac.uk/​research/​fellows/​elizabeth-murchison.html|Dr Elizabeth Murchison]] (Sanger Institute and King's College Cambridge) | **Q&​A/​Roundtable ​discussion ​on scientific publishing** with \\ Dr.(nbsp)Johanna McEntyre (Europe PubMedCentral)\\ Dr.(nbsp)Peter Rogers (Features Editor, eLife), and Dr.(nbsp)Roland Roberts (Assoceditor, PLoS Biology) ​    ​| Brennan(nbsp)Decker\\ Mark(nbsp)Ziats\\ Siddhartha(nbsp)Kar ​  | +| 7th | Feb 27th | Seminar 7 - **Clonally transmissible cancers**\\ [[http://​www.kings.cam.ac.uk/​research/​fellows/​elizabeth-murchison.html|Dr Elizabeth Murchison]] (Sanger Institute and King's College Cambridge) | **Q&​A/​Roundtable ​Discussion ​on Scientific Publishing** with \\ Dr.(nbsp)Johanna McEntyre (Europe PubMedCentral) ​and \\ Dr.(nbsp)Peter Rogers (Features Editor, eLife)\\ [[http://dx.doi.org/​10.1140/​epjds13|Historical perspective on genome papers]] ​ | {{:​2013:​t7-reading.pdf|Recommended Reading}}\\ {{:​2013:​t7-slides.pdf|Slides}}  ​| Brennan(nbsp)Decker\\ Mark(nbsp)Ziats\\ Siddhartha(nbsp)Kar ​  | 
-| 8th | Mar 6th  | Seminar 8 - **Computational analyses of mass-spectrometry experimental organelle proteomics data**\\ [[http://​proteome.sysbiol.cam.ac.uk/​lgatto/​|Dr Laurent Gatto]] (Biochemistry,​ U Cambridge)| ​Cover letters  ​[CD      ​  ​| Mary(nbsp)Fortune\\ Ibrahim(nbsp)Jalloh ​   | +| 8th | Mar 6th  | Seminar 8 - **Computational analyses of mass-spectrometry experimental organelle proteomics data**\\ [[http://​proteome.sysbiol.cam.ac.uk/​lgatto/​|Dr Laurent Gatto]] (Biochemistry,​ U Cambridge)| ​Figures & Tables ​[JS]\\ Reference Managers [JS]     {{:​2013:​t8-reading.pdf|Recommended Reading}}  ​| Mary(nbsp)Fortune\\ Ibrahim(nbsp)Jalloh ​   | 
-| 9th | Mar 13th | Conclusion ​ | Summary & Feedback\\ [CD & JS]    |                      |                    |  ​+| 9th | Mar 13th | Conclusion ​ | Cover letters ​ [CD] \\  ​Summary & Feedback \\ [CD & JS]    |                      |                    |  ​
 Legend: [CD]: Dr Christophe Dessimoz; [JS]: Dr James Smith Legend: [CD]: Dr Christophe Dessimoz; [JS]: Dr James Smith